Author: itembalabantu
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Protein foundation models (AlphaFold3, ESM3): does beating the specialist baseline mean generalization — or memorization?
Evidence-first notes on bioscience and deep tech, at the edge of the lab and the market. Information only — not investment advice. The 30-second version What. On FoldBench, a leakage-controlled independent benchmark, AlphaFold3 (AF3) leads on most tasks — but its score splits sharply by axis. It is robust on protein monomers (LDDT 0.88) and…
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The landscape of biology foundation models: do they actually beat the old specialized baselines?
Evidence-first notes on bioscience and deep tech, at the edge of the lab and the market. Information only — not investment advice. The 30-second version What. Protein, genome and cell “foundation models” (bio-FMs) are usually sold with headlines like “simulating millions of years of evolution.” The firm’s one question is narrower: on a specific task,…
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AI protein design’s validation reality — high in-silico scores, low wet-lab hit rates, and why an honest success-rate benchmark is still missing
Evidence-first notes on bioscience and deep tech, at the edge of the lab and the market. Information only — not investment advice, not medical advice. This is the bottleneck layer of the AI-protein-design series, where its central question resolves. Self-reported in-silico success rates and improvement factors (from original authors and vendors) are separated throughout from…
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Function — where AI protein design actually ships binding, catalysis and neutralization, and where it still fails. A ladder: binders on top, enzymes in the middle, antibodies at the bottom
Evidence-first notes on bioscience and deep tech, at the edge of the lab and the market. Information only — not investment advice, not medical advice. All success-rate, affinity and kcat/KM figures are attributed to the primary paper (Nature/Science) or company IR, with the media tier noted inline. Reported success rates are relative to the candidates…
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The generative engine for protein design — backbone diffusion + inverse folding + a self-consistency filter that only checks folding, not function
Evidence-first notes on bioscience and deep tech, at the edge of the lab and the market. Information only — not investment advice, not medical advice. Every in-silico metric (scRMSD, pLDDT, sequence recovery, designability) is separated from wet-lab validation (X-ray/cryo-EM, binding, activity), and any vendor/lab claim is attributed. Benchmark or preprint SOTA is not read as…